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ncbi taxonomy browser  (Biotechnology Information)

 
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    Biotechnology Information ncbi taxonomy browser
    Ncbi Taxonomy Browser, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/classification/biotechnology+database+information+ncbi/pm42272257-229-11-9
    Average 86 stars, based on 1 article reviews
    ncbi taxonomy browser - by Bioz Stars, 2026-10
    86/100 stars

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    Article Title: Ecological drivers of Promethearchaeati’s specialization for deep subsurface environments
    Article Snippet: However, there are some discrepancies between the classification provided by GTDB and that of the National Center for Biotechnology Information (NCBI).

    Article Title: Whole-cell modeling predicts alternative proteome allocation strategies in the archaeon Methanococcus maripaludis.
    Article Snippet: We first retrieved the gene and protein sequences and annotations, including start and end positions, and strand direction from the National Center for Biotechnology Information (NCBI) database (taxonomy ID: 267377)28.

    Article Title: Differential Effects of Uropathogenic and Non-Uropathogenic E. coli on the Mouse Urobiome and Urine NGAL Levels
    Article Snippet: The ASVs were annotated, using the Bayesian LCA-based taxonomic classification method, which uses the National Center for Biotechnology Information (NCBI) database to achieve taxon identification.

    Article Title: ErythroCite: a database on red blood cell size of fishes
    Article Snippet: This taxonomic harmonization consists of three automated steps: first, we searched for species names in the National Center for Biotechnology Information (NCBI) taxonomy database; second, we verified any unmatched taxonomic entities using the Integrated Taxonomic Information System (ITIS) database; and third, we cross-checked remaining unmatched entities against the Global Biodiversity Information Facility (GBIF) database.

    Article Title: ErythroCite: a database on red blood cell size of fishes.
    Article Snippet: This taxonomic harmonization consists of three automated steps: first, we searched for species names in the National Center for Biotechnology Information (NCBI) taxonomy database; second, we verified any unmatched taxonomic entities using the Integrated Taxonomic Information System (ITIS) database; and

    Article Title: A multiomics atlas of the Arabidopsis nuclear envelope
    Article Snippet: Species-level taxonomy (domain/kingdom, phylum, class, order, family, genus, and species) was retrieved from the National Center for Biotechnology Information (NCBI) Taxonomy database ( , ) via Entrez E-utilities (EFetch, db = taxonomy) using the NCBI taxonomy IDs carried in the PANTHER responses.

    Isolation:

    Article Title: Method for predicting and improving treatment response to intestinal microbiome-based cancer immunotherapy and method for screening for candidate prebiotics
    Article Snippet: .. The prediction method includes evaluating, from feces isolated from a patient, the enrichment of a strain according to NCBI phylogenetic classification of at least one of phylogenetic classification IDs: 1262796, 1262847, 1262772, 1262800, 1262811, 1262840, 1262822, 1262810, 1262839, 1262813, 1262784, 1262841, 1262823, 1262815, 1262812, 1262807, 1262799, 1262820, 1262788, 1262801, 1262789, 1896989, 1896977, 1896978, 1896979, 1896980, 1896981, 1896986, 1950810, 1950830, 1950862, 1950880, 1950887, 1950920, 1958817, and 1506 according to National Center for Biotechnology Information (NCBI) phylogenetic classification, and predicting a treatment response of the patient to cancer immunotherapy based on the enrichment of the at least one strain according to NCBI phylogenetic classification. ..



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    Coronal Plane Alignment of the Knee (CPAK) classification with nine theoretical knee types. Source : Adapted from MacDessi et al. . aHKA, arithmetic hip–knee–ankle angle; HKA, hip–knee–ankle angle; JLO, joint line obliquity; LDFA, lateral distal femoral angle; MPTA, medial proximal tibial angle.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Coronal Plane Alignment of the Knee (CPAK) classification with nine theoretical knee types. Source : Adapted from MacDessi et al. . aHKA, arithmetic hip–knee–ankle angle; HKA, hip–knee–ankle angle; JLO, joint line obliquity; LDFA, lateral distal femoral angle; MPTA, medial proximal tibial angle.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques:

    Deterministic mapping between functional knee phenotypes (FMA mean = x ‐coordinate − TMA mean = y ‐coordinate) and CPAK classification femoral. The x ‐axis represents the femoral mechanical angle (FMA): values to the left (FMA < 93°) correspond to varus femoral orientation, values to the right (FMA > 93°) to valgus femoral orientation. The y ‐axis represents the tibial mechanical angle (TMA): values below (TMA < 87°) correspond to varus tibial orientation, values above (TMA > 87°) to valgus tibial orientation. Population means (FMA = 93°, TMA = 87°) serve as phenotypic neutrality references per the Hirschmann classification. CPAK, Coronal Plane Alignment of the Knee.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Deterministic mapping between functional knee phenotypes (FMA mean = x ‐coordinate − TMA mean = y ‐coordinate) and CPAK classification femoral. The x ‐axis represents the femoral mechanical angle (FMA): values to the left (FMA < 93°) correspond to varus femoral orientation, values to the right (FMA > 93°) to valgus femoral orientation. The y ‐axis represents the tibial mechanical angle (TMA): values below (TMA < 87°) correspond to varus tibial orientation, values above (TMA > 87°) to valgus tibial orientation. Population means (FMA = 93°, TMA = 87°) serve as phenotypic neutrality references per the Hirschmann classification. CPAK, Coronal Plane Alignment of the Knee.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: Functional Assay

    Correspondence between functional knee phenotypes and CPAK types across femoral (FMA = x ‐coordinate) and tibial (TMA = y ‐coordinate) mechanical angle intervals. Each functional phenotype corresponds to a 3° angular interval, defined as ± 1.5° around the central femoral (FMA) and tibial (TMA) mechanical angle values. The table illustrates the theoretical mapping between these FMA–TMA intervals and the CPAK classification. When the angular interval of a phenotype intersects several CPAK regions, multiple CPAK types are listed within the same cell. CPAK, Coronal Plane Alignment of the Knee.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Correspondence between functional knee phenotypes and CPAK types across femoral (FMA = x ‐coordinate) and tibial (TMA = y ‐coordinate) mechanical angle intervals. Each functional phenotype corresponds to a 3° angular interval, defined as ± 1.5° around the central femoral (FMA) and tibial (TMA) mechanical angle values. The table illustrates the theoretical mapping between these FMA–TMA intervals and the CPAK classification. When the angular interval of a phenotype intersects several CPAK regions, multiple CPAK types are listed within the same cell. CPAK, Coronal Plane Alignment of the Knee.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: Functional Assay

    Distribution of functional knee phenotypes according to the Hirschmann and MacDessi (CPAK) classifications in osteoarthritic (OA) and non‐osteoarthritic (NO) populations. CPAK distributions obtained from the Hirschmann functional phenotype cohort are compared with those reported in the original CPAK cohort (MacDessi) in NO and OA populations. Four attribution strategies were applied: mean, using the central FMA and TMA values; interval, considering the full angular ranges (±1.5°) of each phenotype; stochastic, using Monte Carlo sampling within these intervals; and rare, selecting CPAK types located at the margins of the compatible aHKA–JLO space. aHKA, arithmetic hip–knee–ankle angle; CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; JLO, joint line obliquity; TMA, total knee arthroplasty.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Distribution of functional knee phenotypes according to the Hirschmann and MacDessi (CPAK) classifications in osteoarthritic (OA) and non‐osteoarthritic (NO) populations. CPAK distributions obtained from the Hirschmann functional phenotype cohort are compared with those reported in the original CPAK cohort (MacDessi) in NO and OA populations. Four attribution strategies were applied: mean, using the central FMA and TMA values; interval, considering the full angular ranges (±1.5°) of each phenotype; stochastic, using Monte Carlo sampling within these intervals; and rare, selecting CPAK types located at the margins of the compatible aHKA–JLO space. aHKA, arithmetic hip–knee–ankle angle; CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; JLO, joint line obliquity; TMA, total knee arthroplasty.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: Functional Assay, Sampling

    Hirschmann‐CPAK (HCT‐9) reading grid. CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; HCT‐9, Hirschmann–CPAK Translational grid; TMA, tibial mechanical angle.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Hirschmann‐CPAK (HCT‐9) reading grid. CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; HCT‐9, Hirschmann–CPAK Translational grid; TMA, tibial mechanical angle.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: